Prerequisites, performance and profits of transcriptional profiling the abiotic stress response.
Identifieur interne : 002939 ( Main/Exploration ); précédent : 002938; suivant : 002940Prerequisites, performance and profits of transcriptional profiling the abiotic stress response.
Auteurs : Joachim Kilian [Allemagne] ; Florian Peschke ; Kenneth W. Berendzen ; Klaus Harter ; Dierk WankeSource :
- Biochimica et biophysica acta [ 0006-3002 ] ; 2012.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Plant Proteins.
- genetics : Plants.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Plant Physiological Phenomena, Stress, Physiological.
Abstract
During the last decade, microarrays became a routine tool for the analysis of transcripts in the model plant Arabidopsis thaliana and the crop plant species rice, poplar or barley. The overwhelming amount of data generated by gene expression studies is a valuable resource for every scientist. Here, we summarize the most important findings about the abiotic stress responses in plants. Interestingly, conserved patterns of gene expression responses have been found that are common between different abiotic stresses or that are conserved between different plant species. However, the individual histories of each plant affect the inter-comparability between experiments already before the onset of the actual stress treatment. This review outlines multiple aspects of microarray technology and highlights some of the benefits, limitations and also pitfalls of the technique. This article is part of a Special Issue entitled: Plant gene regulation in response to abiotic stress.
DOI: 10.1016/j.bbagrm.2011.09.005
PubMed: 22001611
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Berendzen</name></author><author><name sortKey="Harter, Klaus" sort="Harter, Klaus" uniqKey="Harter K" first="Klaus" last="Harter">Klaus Harter</name></author><author><name sortKey="Wanke, Dierk" sort="Wanke, Dierk" uniqKey="Wanke D" first="Dierk" last="Wanke">Dierk Wanke</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22001611</idno><idno type="pmid">22001611</idno><idno type="doi">10.1016/j.bbagrm.2011.09.005</idno><idno type="wicri:Area/Main/Corpus">002C58</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002C58</idno><idno type="wicri:Area/Main/Curation">002C58</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002C58</idno><idno type="wicri:Area/Main/Exploration">002C58</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Prerequisites, performance and profits of transcriptional profiling the abiotic stress response.</title><author><name sortKey="Kilian, Joachim" sort="Kilian, Joachim" uniqKey="Kilian J" first="Joachim" last="Kilian">Joachim Kilian</name><affiliation wicri:level="3"><nlm:affiliation>Center of Plant Molecular Biology, ZMBP-Plant Physiology, University of Tuebingen, Tübingen, Germany. joachimkilian@zmbp.uni-tuebingen.de</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Center of Plant Molecular Biology, ZMBP-Plant Physiology, University of Tuebingen, Tübingen</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Tübingen</region><settlement type="city">Tübingen</settlement></placeName></affiliation></author><author><name sortKey="Peschke, Florian" sort="Peschke, Florian" uniqKey="Peschke F" first="Florian" last="Peschke">Florian Peschke</name></author><author><name sortKey="Berendzen, Kenneth W" sort="Berendzen, Kenneth W" uniqKey="Berendzen K" first="Kenneth W" last="Berendzen">Kenneth W. Berendzen</name></author><author><name sortKey="Harter, Klaus" sort="Harter, Klaus" uniqKey="Harter K" first="Klaus" last="Harter">Klaus Harter</name></author><author><name sortKey="Wanke, Dierk" sort="Wanke, Dierk" uniqKey="Wanke D" first="Dierk" last="Wanke">Dierk Wanke</name></author></analytic><series><title level="j">Biochimica et biophysica acta</title><idno type="ISSN">0006-3002</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Plant Physiological Phenomena (MeSH)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Plants (genetics)</term><term>Stress, Physiological (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Phénomènes physiologiques des plantes (MeSH)</term><term>Plantes (génétique)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (métabolisme)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Stress physiologique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Plantes</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Plant Physiological Phenomena</term><term>Stress, Physiological</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Phénomènes physiologiques des plantes</term><term>Régulation de l'expression des gènes végétaux</term><term>Stress physiologique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">During the last decade, microarrays became a routine tool for the analysis of transcripts in the model plant Arabidopsis thaliana and the crop plant species rice, poplar or barley. The overwhelming amount of data generated by gene expression studies is a valuable resource for every scientist. Here, we summarize the most important findings about the abiotic stress responses in plants. Interestingly, conserved patterns of gene expression responses have been found that are common between different abiotic stresses or that are conserved between different plant species. However, the individual histories of each plant affect the inter-comparability between experiments already before the onset of the actual stress treatment. This review outlines multiple aspects of microarray technology and highlights some of the benefits, limitations and also pitfalls of the technique. This article is part of a Special Issue entitled: Plant gene regulation in response to abiotic stress.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22001611</PMID><DateCompleted><Year>2012</Year><Month>04</Month><Day>24</Day></DateCompleted><DateRevised><Year>2016</Year><Month>11</Month><Day>26</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0006-3002</ISSN><JournalIssue CitedMedium="Print"><Volume>1819</Volume><Issue>2</Issue><PubDate><Year>2012</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Biochimica et biophysica acta</Title><ISOAbbreviation>Biochim Biophys Acta</ISOAbbreviation></Journal><ArticleTitle>Prerequisites, performance and profits of transcriptional profiling the abiotic stress response.</ArticleTitle><Pagination><MedlinePgn>166-75</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.bbagrm.2011.09.005</ELocationID><Abstract><AbstractText>During the last decade, microarrays became a routine tool for the analysis of transcripts in the model plant Arabidopsis thaliana and the crop plant species rice, poplar or barley. The overwhelming amount of data generated by gene expression studies is a valuable resource for every scientist. Here, we summarize the most important findings about the abiotic stress responses in plants. Interestingly, conserved patterns of gene expression responses have been found that are common between different abiotic stresses or that are conserved between different plant species. However, the individual histories of each plant affect the inter-comparability between experiments already before the onset of the actual stress treatment. This review outlines multiple aspects of microarray technology and highlights some of the benefits, limitations and also pitfalls of the technique. This article is part of a Special Issue entitled: Plant gene regulation in response to abiotic stress.</AbstractText><CopyrightInformation>Copyright © 2011 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kilian</LastName><ForeName>Joachim</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Center of Plant Molecular Biology, ZMBP-Plant Physiology, University of Tuebingen, Tübingen, Germany. joachimkilian@zmbp.uni-tuebingen.de</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peschke</LastName><ForeName>Florian</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Berendzen</LastName><ForeName>Kenneth W</ForeName><Initials>KW</Initials></Author><Author ValidYN="Y"><LastName>Harter</LastName><ForeName>Klaus</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Wanke</LastName><ForeName>Dierk</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>10</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Biochim Biophys Acta</MedlineTA><NlmUniqueID>0217513</NlmUniqueID><ISSNLinking>0006-3002</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018521" MajorTopicYN="Y">Plant Physiological Phenomena</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010944" MajorTopicYN="N">Plants</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2011</Year><Month>05</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2011</Year><Month>09</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2011</Year><Month>09</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>10</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>10</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>4</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22001611</ArticleId><ArticleId IdType="pii">S1874-9399(11)00174-X</ArticleId><ArticleId IdType="doi">10.1016/j.bbagrm.2011.09.005</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country><region><li>Bade-Wurtemberg</li><li>District de Tübingen</li></region><settlement><li>Tübingen</li></settlement></list><tree><noCountry><name sortKey="Berendzen, Kenneth W" sort="Berendzen, Kenneth W" uniqKey="Berendzen K" first="Kenneth W" last="Berendzen">Kenneth W. Berendzen</name><name sortKey="Harter, Klaus" sort="Harter, Klaus" uniqKey="Harter K" first="Klaus" last="Harter">Klaus Harter</name><name sortKey="Peschke, Florian" sort="Peschke, Florian" uniqKey="Peschke F" first="Florian" last="Peschke">Florian Peschke</name><name sortKey="Wanke, Dierk" sort="Wanke, Dierk" uniqKey="Wanke D" first="Dierk" last="Wanke">Dierk Wanke</name></noCountry><country name="Allemagne"><region name="Bade-Wurtemberg"><name sortKey="Kilian, Joachim" sort="Kilian, Joachim" uniqKey="Kilian J" first="Joachim" last="Kilian">Joachim Kilian</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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